PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g05390
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 289aa    MW: 32746.9 Da    PI: 8.769
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g05390genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019152173223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 +C++C++ F+++  L +H   H
  CA01g05390 152 QCEICHRIFKTSQALGSHRTIH 173
                 7*****************9887 PP

2zf-C2H211.50.00091204226123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp Cgk F +   L  H r+H
  CA01g05390 204 HECPFCGKKFQSGQALGGHKRSH 226
                 79***********9999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.52E-8730No hitNo description
PfamPF139123.9E-7831IPR007087Zinc finger, C2H2
SMARTSM003550.17830IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827835IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SuperFamilySSF576672.52E-8146173No hitNo description
SMARTSM003550.42151173IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663151173IPR007087Zinc finger, C2H2
PfamPF139120.001152174IPR007087Zinc finger, C2H2
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-4200226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.78E-6201227No hitNo description
PfamPF139125.2E-10204226IPR007087Zinc finger, C2H2
SMARTSM003550.016204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.388204226IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MSLSMEKHKC KLCSKKFLSG KALGGHVRSH LIPLPLPPKS TPPLNQDSGS RSESTLSLCS  60
SENQQHLLEH MDFYYGLREN PKKSFRMIDP EFYESETESE RNPSNRKRFK GSPNKEKAAD  120
FVSLSLYSDE KDIAMCLMML SRDVWKDSKL NQCEICHRIF KTSQALGSHR TIHKIKNCNN  180
YEHEARKNSS KRKLASVKNA QKLHECPFCG KKFQSGQALG GHKRSHFVTM STSTTGSSSS  240
TTKFGDYSLM EYSNSADFPN GYIDLNMPAP MEDNDFSQVE FQQEQEFA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754472e-68HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553486.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A0V0HJ381e-103A0A0V0HJ38_SOLCH; Putative zinc finger protein ZAT1-like
STRINGPGSC0003DMT4000121541e-102(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-27C2H2-like zinc finger protein